已部署参考基因组
截止到2018.11.14，分析平台中总计收录了403套不同物种及版本的参考基因组，其中302套是公开的，101套是用户私有的未公开的，其他用户不可见。302套参考基因组中，gff中带有gene name的有131套，具体的gene id 和 name样式可以参考下表，从表格中可以看出，一般研究比较多的，比较成熟的参考基因组会有gene symbol，而且是大家比较耳熟能详的名称，如人、鼠、水稻等，但是有些版本的参考基因组是没有gene symbol。
没有gene symbol的版本，可能这是该物种第一次发布参考基因组，贡献该基因组的课题组没有进行基因命名，而且即使提供了很可能也不是大家普遍认可的，因此意义不大；另外一类没有gene symbol，应该是课题组组装并注释完成后，没有和已有的版本（带有gene symbol）的版本去做对应，因此没有提供gene symbol，这一类如果要和已有gene symbol去对应，就需要将两个版本的gene序列通过blast进行比对，来获取到gene name。
部署参考基因组时我们会基于：NR、GO、KEGG、Swiss-Prot、eggNOG、COG、KOG、Pfam这些功能数据库，对已知基因进行功能注释，最大程度保证基因功能信息是完善的。
| 绿头鸭 | Anas_platyrhynchos | BGI_duck_1.0 | public | ENSAPLG00000000568 | CEBPG | ftp://ftp.ensembl.org/pub/release-74/fasta/anas_platyrhynchos/dna/ |
|---|---|---|---|---|---|---|
| 意蜂 | Apis_mellifera | Amel_4.5 | public | GB42401 | null | ftp://ftp.ensemblgenomes.org/pub/metazoa/release-24/fasta/apis_mellifera/ |
| 蔓花生 | Arachis_duranensis | v1.0 | public | Aradu.B2QWP | null | http://peanutbase.org/files/genomes/Arachis_duranensis/ |
| 牛 | Bos_taurus | UMD3.1 | public | ENSBTAG00000000005 | ADRBK2 | http://www.ensembl.org/Bos_taurus/Info/Index |
| 油菜 | Brassica_napus | v4.1 | public | BnaA01g00010D | null | http://www.genoscope.cns.fr/brassicanapus/data/ |
| 大白菜 | Brassica_rapa | v1.5 | public | Bra000001 | null | ftp://brassicadb.org/Bra_Chromosome_V1.5/ |
| 绒山羊 | Capra_hircus | GCA_000317765.2_CHIR_2.0 | public | GENE_000001 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000317765.2_CHIR_2.0 |
| 板栗 | Castanea_mollissima | v1.0 | public | maker-scaffold32239-augustus-gene-0.0 | null | http://www.hardwoodgenomics.org/chinese-chestnut-genome |
| 西瓜 | Citrullus_lanatus | 97103v1 | public | Cla000001 | null | ftp://www.icugi.org/pub/genome/watermelon/97103/v1/ |
| 长牡蛎 | Crassostrea_gigas | v9 | public | CGI_10000001 | null | ftp://climb.genomics.cn/pub/10.5524/100001_101000/100030/ |
| 甜瓜 | Cucumis_melo | v3.5.1 | public | MELO3C026825 | null | https://melonomics.net/files/Genome/Melon_genome_v3.5.1/ |
| 黄瓜 | Cucumis_sativus | ChineseLong_v2 | public | Csa1G000010 | null | ftp://www.icugi.org/pub/genome/cucumber/Chinese_long/v2/ |
| 斑马鱼 | Danio_rerio | Zv9 | public | ENSDARG00000000001 | slc35a5 | ftp://ftp.ensembl.org/pub/release-62/fasta/danio_rerio/ |
| 原鸡 | Gallus_gallus | Galgal4 | public | ENSGALG00000028776 | null | ftp://ftp.ensembl.org/pub/release-75/fasta/gallus_gallus/ |
| 棉花 | Gossypium_hirsutum | TM-1_v1.1 | public | evm.TU.Gh_A01G0001 | EVM%20prediction%20Gh_A01G0001 | http://mascotton.njau.edu.cn/info/1054/1118.htm |
| 智人 | Homo_sapiens | GRCh38 | public | ENSG00000186092 | OR4F5 | ftp://ftp.ensembl.org/pub/release-80/fasta/homo_sapiens/ |
| 枣树 | Ziziphus_jujuba | version2_13chr | public | CCG023527 | null | |
| 苹果 | Malus_x_domestica | v1.0 | public | MDP0000025650 | null | http://www.rosaceae.org/species/malus/malus_x_domestica/genome_v1.0p |
| 蒺藜苜蓿 | Medicago_truncatula | MedtrA17_4.0 | public | MTR_1g004930 | null | ftp://ftp.ensemblgenomes.org/pub/plants/release-28/fasta/medicago_truncatula/dna/ |
| 小鼠 | Mus_musculus | GRCm38 | public | ENSMUSG00000000001 | Gnai3 | ftp://ftp.ensembl.org/pub/release-78/fasta/mus_musculus/ |
| 绵羊 | Ovis_aries | Oar_v3.1 | public | ENSOARG00000011213 | null | ftp://ftp.ensembl.org/pub/release-78/fasta/ovis_aries/ |
| 中华鳖 | Pelodiscus_sinensis | PelSin_1.0 | public | ENSPSIG00000000001 | null | http://asia.ensembl.org/Pelodiscus_sinensis/Info/Index |
| 大鼠 | Rattus_norvegicus | Rnor_5.0 | public | ENSRNOG00000000001 | Arsj | ftp://ftp.ensembl.org/pub/release-78/fasta/rattus_norvegicus/ |
| 番茄 | Solanum_lycopersicum | SL2.40 | public | Solyc00g005000.2 | null | ftp://ftp.ensemblgenomes.org/pub/plants/release-25/fasta/solanum_lycopersicum/ |
| 茄子 | Solanum_melongena | SME_r2.5.1 | public | Sme2.5_00001.1_g00001 | null | ftp://ftp.kazusa.or.jp/pub/eggplant/ |
| 土豆 | Solanum_tuberosum | v4.03 | public | PGSC0003DMG400015133 | Defensin | http://solanaceae.plantbiology.msu.edu/pgsc_download.shtml |
| 高粱 | Sorghum_bicolor | Sorbi1 | public | Sb2303s002010 | null | ftp://ftp.ensemblgenomes.org/pub/plants/release-25/fasta/sorghum_bicolor/ |
| 高粱 | Sorghum_bicolor | v2.1 | public | Sobic.001G000100 | null | ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/early_release/Sbicolor_v2.1/ |
| 野猪 | Sus_scrofa | Sscrofa10.2 | public | ENSSSCG00000000001 | null | ftp://ftp.ensembl.org/pub/release-75/fasta/sus_scrofa/ |
| 野猪 | Sus_scrofa | Sscrofa10.2_ncbi | public | gene0 | LOC100620291 | ftp://ftp.ncbi.nlm.nih.gov/genomes/Sus_scrofa/ |
| 玉米 | Zea_mays | B73_RefGen_v2 | public | GRMZM2G354611 | null | ftp://ftp.ensemblgenomes.org/pub/plants/release-10/fasta/zea_mays/dna/ |
| 玉米 | Zea_mays | B73_RefGen_v3 | public | GRMZM2G700553 | null | ftp://ftp.ensemblgenomes.org/pub/plants/release-24/fasta/zea_mays/ |
| 毛果杨 | Populus_trichocarpa | v3.0 | public | Potri.001G000100.v3.0 | Potri.001G000100 | http://phytozome.jgi.doe.gov/pz/portal.html#!search?show=KEYWORD&method=Org_Ptrichocarpa |
| 葡萄 | Vitis_vinifera | IGGP_12x | public | VIT_13s0067g03480 | null | ftp://ftp.ensemblgenomes.org/pub/plants/release-25/fasta/vitis_vinifera/,ftp://ftp.ensemblgenomes.org/pub/plants/release-25/fasta/vitis_vinifera/ |
| 核桃 | Juglans_regia | v1.0 | public | WALNUT_00030899 | null | |
| 亚洲棉 | Gossypium_arboreum | v1.0 | public | Cotton_A_00001 | null | |
| 海岛棉 | Gossypium_barbadense | v1.0 | public | Gbscaffold29129.3 | null | http://cotton.cropdb.org/cotton/download/data.php |
| 豚鼠 | Cavia_porcellus | cavPor3 | public | ENSCPOG00000000004 | PSEN1 | http://asia.ensembl.org/Cavia_porcellus/Info/Annotation |
| 柑橘 | Citrus_sinensis | v1.0 | public | orange1.1g000034m.g.v1.1 | null | https://www.citrusgenomedb.org/species/sinensis/genome1.0 |
| 欧洲云杉 | Picea_abies | Chr_v1.0 | public | MA_10g0010 | null | ftp://plantgenie.org/Data/ConGenIE/Picea_abies/v1.0/ |
| 欧洲野兔 | Oryctolagus_cuniculus | OryCun2.0 | public | ENSOCUG00000000001 | ADH6 | ftp://ftp.ensembl.org/pub/release-84/fasta/oryctolagus_cuniculus/dna/ |
| 甜菜 | Beta_vulgaris | RefBeet-1.2 | public | Bv1_000010_iiuw | null | http://bvseq.molgen.mpg.de/Genome/Download/RefBeet-1.2/ |
| 三角褐指藻 | Phaeodactylum_tricornutum | Phatr2 | public | 10005 | null | http://genome.jgi.doe.gov/Phatr2/Phatr2.download.ftp.html |
| 伊萨_酿酒酵母 | Pichia_and_Saccharomyces | merged_v1.0 | public | gene2007 | null | |
| 尖孢镰刀菌 | Fusarium_oxysporum | GCA_000149955.2_ASM14995v2 | public | FOXG_00001 | gene611 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000149955.2_ASM14995v2/GCA_000149955.2_ASM14995v2_genomic.fna.gz |
| 甘蓝 | Brassica_oleracea | v2.1 | public | Bo12644s010 | null | ftp://ftp.ensemblgenomes.org/pub/plants/release-25/fasta/brassica_oleracea/ |
| 马 | Equus_caballus | EquCab2 | public | ENSECAG00000000001 | MTPAP | ftp://ftp.ensembl.org/pub/release-84/fasta/equus_caballus/dna/Equus_caballus.EquCab2.dna.toplevel.fa.gz |
| 香蕉 | Musa_acuminata | v1.0 | public | GSMUA_Achr10G00010_001.v1 | null | http://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=Macuminata |
| 白云杉 | Picea_glauca | PG29_v4.1 | public | ABT39_MTgene1 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000411955.5_PG29_v4.1/GCA_000411955.5_PG29_v4.1_genomic.fna.gz |
| 辣椒疫霉菌 | Phytophthora_capsici | Phyca11 | public | Phyca11_96029 | null | http://genome.jgi.doe.gov/Phyca11/Phyca11.download.ftp.html |
| 水稻恶苗病菌 | Fusarium_fujikuroi | IMI58289_V2 | public | FFUJ_02088 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_900079805.1_Fusarium_fujikuroi_IMI58289_V2 |
| 轮状镰刀菌 | Fusarium_verticillioides | ASM14955v1 | public | FVEG_09964 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000149555.1_ASM14955v1/ |
| 黑腹果蝇 | Drosophila_melanogaster | BDGP6 | public | FBgn0000008 | a | ftp://ftp.ensembl.org/pub/release-84/fasta/drosophila_melanogaster/dna/ |
| 家鹅 | Anser_cygnoides | GCF_000971095.1 | public | gene0 | LOC106029314 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF_000971095.1_AnsCyg_PRJNA183603_v1.0/ |
| 黑曲霉 | Aspergillus_niger | ASM285v2 | public | CADANGAG00000001 | An01g00010 | ftp://ftp.ensemblgenomes.org/pub/fungi/release-25/fasta/aspergillus_niger/ |
| 莱茵衣藻 | Chlamydomonas_reinhardtii | v5.5 | public | Cre01.g000017 | null | http://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=PhytozomeV10 |
| 胶胞炭疽菌 | Colletotrichum_gloeosporioides | Nara_gc-5v1 | public | CGGC5_10370 | null | ftp://ftp.ensemblgenomes.org/pub/fungi/release-25/fasta/colletotrichum_gloeosporioides/dna/ |
| 胶胞炭疽菌 | Colletotrichum_gloeosporioides | Cg-14v1 | public | gene0 | CGLO_00001 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000446055.1_Colletotrichum_gloeosporioides1 |
| 草莓 | Fragaria_vesca | v1.1 | public | gene00090-v1.0-hybrid | null | http://www.rosaceae.org/species/fragaria/fragaria_vesca/genome_v1.1 |
| 大豆 | Glycine_max | Wm82.a2.v1 | public | Glyma.01G000100.Wm82.a2.v1 | null | https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Gmax |
| 东方伊萨酵母 | Pichia_kudriavzevii | v1.0 | public | gene0 | JL09_g5094 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000764455.1_ASM76445v1/ |
| 绿脓假单胞菌 | Pseudomonas_aeruginosa_PAO1 | ASM676v1 | public | gene134012 | dnaA | http://www.pseudomonas.com/download.jsp |
| 西洋梨 | Pyrus_communis | v1.0 | public | PCP000001_v1.0 | PCP000001 | https://phytozome.jgi.doe.gov/pz/portal.html#%21info?alias=Org_Sitalica_er |
| 萝卜 | Raphanus_sativus | RSA_r1.0 | public | Rsa1.0_00001.1_g00001 | null | ftp://ftp.kazusa.or.jp/pub/radish/ |
| 根瘤菌 | Rhizobium_sp_h41 | ASM75844v1 | public | LW14_25410 | null | ftp://ftp.ensemblgenomes.org/pub/bacteria/release-25/fasta/bacteria_85_collection/rhizobium_sp_h41/ |
| 酿酒酵母 | Saccharomyces_cerevisiae_S288C | R64-2-1 | public | YAL069W | null | http://downloads.yeastgenome.org/sequence/S288C_reference/genome_releases/ |
| 谷子 | Setaria_italica | Setaria_V2 | public | Si040866m.g | null | https://phytozome.jgi.doe.gov/pz/portal.html#%21info?alias=Org_Sitalica_er |
| 轮枝菌 | Verticillium_dahliae | vdls.17_1 | public | VDAG_02232 | null | |
| 茯苓 | Wolfiporia_cocos | MD-104_SS10_v1.0 | public | gene_1 | jgi.p|Wolco1|147056 | http://genome.jgi-psf.org/programs/fungi/index.jsf |
| 桃 | Prunus_persica | v1.0 | public | ppa000003m.g | null | ftp://ftp.bioinfo.wsu.edu/species/Prunus_persica/Prunus_persica-genome.v1.0/ |
| 本生烟草 | Nicotiana_benthamiana | v0.4.4 | public | NbC23129049g0001 | null | ftp://ftp.solgenomics.net/genomes/Nicotiana_benthamiana/ |
| 烟草 | Nicotiana_tabacum | Ntab-K326 | public | gene_10 | null | ftp://ftp.solgenomics.net/genomes/Nicotiana_tabacum/ |
| 猕猴桃 | Actinidia_chinensis | v1.0 | public | Achn000001 | null | ftp://bioinfo.bti.cornell.edu/pub/kiwifruit |
| 毛果杨 | Populus_trichocarpa | demo | public | Potri.001G000100.v3.0 | Potri.001G000100 | |
| 辣椒 | Capsicum_annuum | PGAv.1.5 | public | CA01g00010 | null | http://peppergenome.snu.ac.kr/download.php |
| 辣椒 | Capsicum_annuum | Zunla-1_v2.0 | public | Capana00g000002 | null | http://peppersequence.genomics.cn/page/species/download.jsp |
| 斑翅果蝇 | Drosophila_suzukii | v1 | public | DS10_00012179 | null | http://spottedwingflybase.oregonstate.edu/ |
| 猕猴 | Macaca_mulatta | MMUL_1 | public | ENSMMUG00000000001 | CCNF | ftp://ftp.ensembl.org/pub/release-84/fasta/macaca_mulatta/dna/ |
| 食蟹猴 | Macaca_fascicularis | MacFas_5.0 | public | ENSMFAG00000000025 | SKA1 | ftp://ftp.ensembl.org/pub/release-92/fasta/macaca_fascicularis/dna/Macaca_fascicularis.Macaca_fascicularis_5.0.dna.toplevel.fa.gz,ftp://ftp.ensembl.org/pub/release-92/gff3/macaca_fascicularis/Macaca_fascicularis.Macaca_fascicularis_5.0.92.gff3.gz |
| 麻疯树 | Jatropha_curcas | v4.5 | public | Jcr4S00001.10 | null | ftp://ftp.kazusa.or.jp/pub/jatropha/ |
| 绒山羊 | Capra_hircus | GCF_000317765.1_CHIR_1.0 | public | gene0 | LOC102190458 | |
| 胡萝卜 | Daucus_carota | ASM162521v1 | public | gene0 | DCAR_000504 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_001625215.1_ASM162521v1/ |
| 拟南芥 | Arabidopsis_thaliana | TAIR10 | public | AT1G01010 | ANAC001 | ftp://ftp.ensemblgenomes.org/pub/plants/release-25/fasta/arabidopsis_thaliana/ |
| 水稻 | Oryza_sativa | IRGSP-1.0 | public | Os01g0100100 | null | ftp://ftp.ensemblgenomes.org/pub/plants/release-24/fasta/oryza_sativa/,http://rapdb.dna.affrc.go.jp/download/archive/RAP-MSU_2016-08-05.txt.gz |
| 水稻 | Oryza_sativa | MSU_v7.0 | public | LOC_Os01g01010 | null | ftp://ftp.plantbiology.msu.edu/pub/data/Eukaryotic_Projects/o_sativa/annotation_dbs/pseudomolecules/version_7.0/all.dir/,http://rapdb.dna.affrc.go.jp/download/archive/RAP-MSU_2016-08-05.txt.gz |
| 小新壳梭孢菌 | Neofusicoccum_parvum_UCRNP2 | UCRNP2 | public | UCRNP2_1 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF_000385595.1_UCRNP2V3 |
| 油橄榄 | Olea_europaea | Oe6 | public | OE6A002689 | null | http://denovo.cnag.cat/genomes/olive/ |
| 雷蒙德氏棉 | Gossypium_raimondii | v2.0 | public | gene42380 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF_000327365.1_Graimondii2_0 |
| 雷蒙德氏棉 | Gossypium_raimondii | v2.1 | public | Gorai.001G000100.v2.1 | null | https://www.cottongen.org/species/Gossypium_raimondii/jgi_genome_221 |
| 熊猫 | Ailuropoda_melanoleuca | ailMel1 | public | gene8694 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF_000004335.2_AilMel_1.0 |
| 橡胶树 | Hevea_brasiliensis | ASM165405v1 | public | scaffold1222_3185 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_001654055.1_ASM165405v1/GCA_001654055.1_ASM165405v1_genomic.fna.gz |
| 家蚕 | Bombyx_mori | ASM15162v1 | public | BGIBMGA007325 | null | ftp://ftp.ensemblgenomes.org/pub/metazoa/release-24/fasta/bombyx_mori/ |
| 家蚕 | Bombyx_mori | v2.0 | public | Bm_nscaf1022_2 | null | |
| 松材线虫 | Bursaphelenchus_xylophilus | v1.2 | public | BUX.gene.s00001.1 | null | ftp://ftp.sanger.ac.uk/pub/pathogens/Bursaphelenchus/xylophilus/Assembly-v1.2/BurXv1.2.supercontigs.fa.gz,ftp://ftp.sanger.ac.uk/pub/pathogens/Bursaphelenchus/xylophilus/Assembly-v1.2/BUX.v1.2.phase_correct.gff3.gz |
| 小麦 | Triticum_aestivum | TGACv1 | public | TRIAE_CS42_1AL_TGACv1_000002_AA0000030 | null | |
| 谷子 | Setaria_italica | v2.2 | public | Seita.1G000100 | null | https://phytozome.jgi.doe.gov/pz/portal.html#%21info?alias=Org_Sitalica_er |
| 热带念珠菌MYA-3404 | Candida_tropicalis_MYA-3404 | ASM633v2 | public | CTRG_00001 | null | ftp://ftp.ensemblgenomes.org/pub/release-32/fungi/fasta/fungi_ascomycota1_collection/candida_tropicalis_mya_3404/dna/Candida_tropicalis_mya_3404.ASM633v2.dna.toplevel.fa.gz |
| 蓖麻 | Ricinus_communis | v0.1 | public | 27371.t000001.TIGRR0.1 | null | |
| 荷花 | Nelumbo_nucifera | v1 | public | NNU_00001 | null | http://lotus-db.wbgcas.cn/genome_download |
| 麻疯树 | Jatropha_curcas | JatCur_1.0 | public | gene0 | null | |
| 尼罗罗非鱼 | Oreochromis_niloticus | Orenil1.0 | public | ENSONIG00000007932 | null | |
| 蚜虫 | Acyrthosiphon_pisum | GCA_000142985.2 | public | ACYPI088670 | null | ftp://ftp.ensemblgenomes.org/pub/release-32/metazoa/fasta/acyrthosiphon_pisum/dna/ |
| 玉米 | Zea_mays | B73_RefGen_v4 | public | Zm00001d027230 | null | ftp://ftp.ensemblgenomes.org/pub/release-32/plants/fasta/zea_mays/dna |
| 黑芥 | Brassica_nigra | BniBv1 | public | BniB041813 | null | |
| 芥菜 | Brassica_juncea | BjuABv1 | public | BjuA000715 | null | |
| 丹参 | Salvia_miltiorrhiza | ndctcm | public | SMil_00012983 | null | ftp://danshen.ndctcm.org:10322,http://www.ndctcm.org/shujukujieshao/2015-04-23/27.html |
| 绒山羊 | Capra_hircus | ASM170441v1 | public | gene1 | ATP5O | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/704/415/GCF_001704415.1_ASM170441v1/GCF_001704415.1_ASM170441v1_genomic.fna.gz |
| 穿山甲 | Manis_javanica | ManJav1.0 | public | gene0 | MAOA | |
| 柳树 | Salix_purpurea | v1.0 | public | SapurV1A.0035s0010.v1.0 | SapurV1A.0035s0010 | https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Spurpurea |
| 胡杨 | Populus_euphratica | PopEup_1.0 | public | gene0 | LOC105127819 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/495/115/GCF_000495115.1_PopEup_1.0 |
| 火炬松 | Pinus_taeda | v1.01 | public | 5A_I15_VO_L_4119_T_28/41|m.47096.path1 | null | http://dendrome.ucdavis.edu/ftp/Genome_Data/genome/pinerefseq/Pita/v1.01/ |
| 海岛棉 | Gossypium_barbadense | v1 | public | GOBAR_AA09157 | null | http://database.chgc.sh.cn/cotton/index.html; |
| 番茄 | Solanum_lycopersicum | SL2.50 | public | Solyc01g005000.2 | null | ftp://ftp.ensemblgenomes.org/pub/release-32/plants/fasta/solanum_lycopersicum/dna |
| 籼稻,水稻 | Oryza_sativa | ASM465v1 | public | BGIOSGA002568 | null | http://plants.ensembl.org/Oryza_indica/Info/Index |
| 籼稻,水稻, | Oryza_sativa | Zhenshan_97 | public | ZS01g0010000 | null | http://rice.hzau.edu.cn/rice/ |
| 籼稻,水稻, | Oryza_sativa | Minghui_63 | public | MH01g0010000 | null | http://rice.hzau.edu.cn/rice/ |
| 白梨 | Pyrus_x_bretschneideri | Pbr_v1.0 | public | gene0 | LOC103926516 | https://www.ncbi.nlm.nih.gov/assembly/GCF_000315295.1/ |
| 柳枝稷 | Panicum_virgatum | v1.1 | public | Pavir.Aa00001.v1.1 | Pavir.Aa00001 | http://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=PhytozomeV11 |
| 甘薯 | Ipomoea_batatas | v1 | public | Tai6.10 | null | http://public-genomes-ngs.molgen.mpg.de/SweetPotato/DOWNLOADS/ |
| 野牦牛 | Bos_mutus | v2.0 | public | gene0 | M91_19538 | http://www.ncbi.nlm.nih.gov/genome/?term=yak |
| 鸡 | Gallus_gallus | Gallus_gallus_5.0 | public | gene0 | LOC425783 | https://www.ncbi.nlm.nih.gov/assembly/GCF_000002315.4/ |
| 桃 | Prunus_persica | v2.0 | public | Prupe.1G000100.v2.1 | null | http://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=Ppersica |
| 狗尾草 | Setaria_viridis | v1.1 | public | Sevir.1G000100.v1.1 | null | https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Sviridis |
| 棘胞木霉 | Trichoderma_asperellum | CBS_433.97_v1.0 | public | gene_1 | null | http://genome.jgi.doe.gov/Trias1/Trias1.home.html |
| 弗比恩毕赤酵母 | Cyberlindnera_fabianii | ASM198330v1 | public | gene0 | BON22_0001 | https://www.ncbi.nlm.nih.gov/assembly/GCA_001983305.1 |
| 东方伊萨酵母 | Pichia_kudriavzevii | ASM198332v1 | public | gene0 | BOH78_0001 | https://www.ncbi.nlm.nih.gov/assembly/GCA_001983325.1 |
| 毛竹 | Phyllostachys_edulis | v1.0 | public | PH01000000G0240 | null | http://202.127.18.221/bamboo/ |
| 羊驼 | Vicugna_pacos | Vicugna_pacos2.0.2 | public | gene0 | LOC107033089 | https://www.ncbi.nlm.nih.gov/assembly/GCF_000164845.2 |
| 大麦 | Hordeum_vulgare | ASM32608v1 | public | MLOC_10027 | null | http://plants.ensembl.org/Hordeum_vulgare/Info/Annotation/#assembly |
| 蟾蜍 | Xenopus_laevis | v9.1 | public | Xelaev18000001m.g | null | http://www.xenbase.org/other/static/ftpDatafiles.jsp |
| 爪蟾 | Xenopus_tropicalis | v9.0 | public | Xetrov90000001m.g | null | http://www.xenbase.org/other/static/ftpDatafiles.jsp |
| 龙眼 | Dimocarpus_longan | v1 | public | Dlo_000001.1.gene | null | ftp://climb.genomics.cn/pub/10.5524/100001_101000/100276/ |
| 大豆 | Glycine_max | V1.0 | public | GLYMA0041S00300 | null | ftp://ftp.ensemblgenomes.org/pub/plants/release-25/fasta/glycine_max/ |
| 蚜虫 | Acyrthosiphon_pisum | Acyr_2.0 | public | gene0 | LOC100569617 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/142/985/GCF_000142985.2_Acyr_2.0/GCF_000142985.2_Acyr_2.0_genomic.fna.gz |
| 斑马鱼 | Danio_rerio | GRCz10 | public | gene0 | rpl24 | |
| 智人 | Homo_sapiens | GRCh37 | public | ENSG00000000457 | SCYL3 | http://grch37.ensembl.org/Homo_sapiens/Info/Annotation#assembly |
| 青霉菌 | Penicillium_digitatum_PHI26 | PdigPHI26_v1 | public | EKV06676.1 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000315665.1_PdigPHI26_v1 |
| 黄曲霉 | Aspergillus_flavus | JCVI-afl1-v2.0 | public | CADAFLAG00000001 | AFLA_071780 | http://fungi.ensembl.org/index.html |
| 出芽短梗霉菌 | Aureobasidium_pullulans | EXF.150 | public | gene0 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000721785.1_Aureobasidium_pullulans_var._pullulans_EXF-150_assembly_version_1.0 |
| 伊蚊 | Aedes_aegypti | AaegL3 | public | AaeL_AAEL018658 | null | https://funcgen.vectorbase.org/downloads |
| 家鹅 | Anser_cygnoides | v1.0 | public | ACY_000001 | null | |
| 凤梨 | Ananas_comosus | v3 | public | Aco006623.v3 | null | http://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=PhytozomeV10 |
| 落花生 | Arachis_ipaensis | K30076 | public | Araip.03MS6 | null | http://peanutbase.org/files/genomes/Arachis_ipaensis/annotation/ |
| 鹰嘴豆 | Cicer_arietinum | ASM33114v1 | public | gene2 | LOC101488545 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/331/145/GCF_000331145.1_ASM33114v1 |
| 鲤 | Cyprinus_carpio | v1.0 | public | cycg044615 | null | http://www.carpbase.org/download_home.php |
| 黑腹果蝇 | Drosophila_melanogaster | v1 | public | DS10_00012179 | null | http://spottedwingflybase.oregonstate.edu/ |
| 香蕉 | Musa_acuminata | ASM31385v1 | public | gene0 | LOC103968336 | |
| 香蕉 | Musa_acuminata | PKWv1 | public | ITC1587_Bchr10_G28349 | null | http://banana-genome.cirad.fr/content/musa-balbisiana-pisang-klutuk--wulung |
| 褐家鼠 | Rattus_norvegicus | Rn_Celera | public | gene0 | Vom2r4 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF_000002265.2_Rn_Celera/ |
| 白粉菌 | Blumeria_graminis | 96224 | public | gene0 | BGT96224_5020 | http://www.ncbi.nlm.nih.gov/assembly/GCA_000418435.1/ |
| 青霉菌 | Penicillium_digitatum | PHI26_v1 | public | EKV06676.1 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000315665.1_PdigPHI26_v1 |
| 玉米大斑病菌Et28A | Setosphaeria_turcica | Et28A_v1.0 | public | gene0 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF_000359705.1_Setospaeria_trucica_Et28A_v1.0/ |
| 核盘菌 | Sclerotinia_sclerotiorum | ASM14694v1 | public | gene0 | SS1G_14447 | https://www.ncbi.nlm.nih.gov/assembly/GCF_000146945.1/ |
| 秀丽隐杆线虫 | Caenorhabditis_elegans | WBcel235 | public | gene0 | Y74C9A.6 | |
| 链格孢 | Alternaria_alternata | Altal1 | public | gene0 | CC77DRAFT_923880 | https://www.ncbi.nlm.nih.gov/assembly/GCF_001642055.1/ |
| 褐飞虱 | Nilaparvata_lugens | insect.v1 | public | BPHOGS10000001 | null | http://www.insect-genome.com/data/download.php |
| 毛果杨 | Populus_trichocarpa | Poptr2_0 | public | gene0 | null | https://www.ncbi.nlm.nih.gov/assembly/GCF_000002775.3/ |
| 链格孢菌 | Alternaria_alternata | ATCC66891 | public | AAT_PG00001 | AATCTG00001.jigsaw-gene.1 | http://alternaria.vbi.vt.edu/index.html |
| 茶树 | Camellia_sinensis | v1 | public | CSA023492 | null | http://www.plantkingdomgdb.com/tea_tree/ |
| 芦笋 | Asparagus_officinalis | Aspof.V1 | public | gene0 | LOC109828828 | https://www.ncbi.nlm.nih.gov/assembly/GCF_001876935.1/ |
| 柑橘 | Citrus_sinensis | v2 | public | Cs1g01010 | null | http://citrus.hzau.edu.cn/orange/download/index.php |
| 本核盘菌 | Sclerotinia_sclerotiorum | ASM185786v1 | public | gene0 | sscle_01g000010 | https://www.ncbi.nlm.nih.gov/assembly/GCA_001857865.1/ |
| 大鼠 | Rattus_norvegicus | Rnor_6.0 | public | ENSRNOG00000000007 | Gad1 | ftp://ftp.ensembl.org/pub/release-85/fasta/rattus_norvegicus/ |
| 斑马鱼 | Danio_rerio | GRCz10.87 | public | ENSDARG00000000001 | slc35a5 | ftp://ftp.ensembl.org/pub/release-87/gtf/danio_rerio/ |
| 小麦 | Triticum_aestivum | IWGSC_RefSeq_v1.0 | public | TraesCS1A01G000100 | null | https://urgi.versailles.inra.fr/download/iwgsc/IWGSC_RefSeq_Assemblies/v1.0/,https://urgi.versailles.inra.fr/download/iwgsc/IWGSC_RefSeq_Annotations/v1.0/?C=S;O=D |
| 芝麻 | Sesamum_indicum | S_indicum_v1.0 | public | gene0 | LOC110012451 | https://www.ncbi.nlm.nih.gov/genome/11560?genome_assembly_id=49670 |
| 芝麻 | Sesamum_indicum | v1.0 | public | SIN_1000325 | null | http://ocri-genomics.org/Sinbase/download/Sesamum_indicum_GA_pseudomolecules_unanchored_v1.0.tar.gz |
| 水稻 | Oryza_sativa | R498 | public | OsR498G1017994000.01 | null | http://www.mbkbase.org/R498/ |
| 中国南瓜 | Cucurbita_moschata | v1 | public | CmoCh00G000010 | null | |
| 笋瓜,印度南瓜 | Cucurbita_maxima | v1.1 | public | CmaCh00G000010 | null | |
| 欧洲白桦,白桦 | Betula_pendula | v1.2 | public | 1 | Bpev01.c0000.g0001 | https://genomevolution.org/coge/api/v1/genomes/35079/sequence |
| 桔小实蝇 | Bactrocera_dorsalis | ASM78921v2 | public | 41 | null | https://www.ncbi.nlm.nih.gov/genome/?term=ASM78921v2 |
| 生菜,莴苣 | Lactuca_sativa | V8 | public | Lsat_1_v5_gn_0_36880 | null | https://genomevolution.org/CoGe/GenomeInfo.pl?gid=35223 |
| 黄鳝 | Monopterus_albus | M_albus_1.0 | public | gene0 | mrps16 | https://www.ncbi.nlm.nih.gov/genome/?term=Monopterus+albus |
| 苦荞,苦荞麦 | Fagopyrum_tataricum | Pinku1 | public | FtPinG0005787800.01 | null | http://www.mbkbase.org/Pinku1/ |
| 绿头鸭,北京鸭 | Anas_platyrhynchos | White_Pekin_Duck_v4.0 | public | gene4974 | LOC101794669 | |
| 柑橘,克里曼丁红橘 | Citrus_clementina | v1.0 | public | Ciclev10007219m.g.v1.0 | Ciclev10007219m.g | http://genome.jgi.doe.gov/pages/dynamicOrganismDownload.jsf?organism=Cclementina |
| 银杏 | Ginkgo_biloba | v1 | public | gene.Gb_00001 | null | http://gigadb.org/dataset/100209 |
| 苹果 | Malus_domestica | GDDH13_v1.1 | public | MD00G1000100 | null | ftp://ftp.bioinfo.wsu.edu/species/Malus_x_domestica/Malus_x_domestica-genome_GDDH13_v1.1/assembly/GDDH13_1-1_formatted.fasta.gz |
| 藜麦 | Chenopodium_quinoa | ASM168347v1 | public | gene0 | LOC110725042 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/683/475/GCF_001683475.1_ASM168347v1/GCF_001683475.1_ASM168347v1_genomic.fna.gz |
| 油菜 | Brassica_napus | ZS11 | public | BnA01g0000010 | null | http://ocri-genomics.org/Brassia_napus_genome_ZS11/data/genome_assembly/Brassica_napus_ZS11_genome_assemblyV201608.fa |
| 川金丝猴 | Rhinopithecus_roxellana | Rrox_v1 | public | gene0 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/769/185/GCF_000769185.1_Rrox_v1/ |
| 野猪 | Sus_scrofa | Sscrofa11.1 | public | ENSSSCG00000037372 | TBP | ftp://ftp.ensembl.org/pub/release-90/fasta/sus_scrofa/dna/,ftp://ftp.ensembl.org/pub/release-90/gff3/sus_scrofa |
| 朱鹮 | Nipponia_nippon | ASM70822v1 | public | gene0 | CUL9 | ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/708/225/GCF_000708225.1_ASM70822v1/GCF_000708225.1_ASM70822v1_genomic.fna.gz |
| 枣 | Ziziphus_jujuba | ZizJuj_1.1 | public | gene0 | LOC107415205 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/826/755/GCF_000826755.1_ZizJuj_1.1/GCF_000826755.1_ZizJuj_1.1_genomic.fna.gz |
| 高粱 | Sorghum_bicolor | NCBIv3 | public | gene0 | LOC8081570 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/195/GCF_000003195.3_Sorghum_bicolor_NCBIv3/GCF_000003195.3_Sorghum_bicolor_NCBIv3_genomic.gff.gz |
| 仓鼠 | Cricetulus_griseus | CriGri_1.0 | public | gene4 | Gata3 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/223/135/GCF_000223135.1_CriGri_1.0/GCF_000223135.1_CriGri_1.0_genomic.fna.gz |
| 番茄 | Solanum_lycopersicum | ITAG3.2 | public | Solyc00g005000.3 | null | https://solgenomics.net/organism/Solanum_lycopersicum/genome |
| 金仓鼠 | Mesocricetus_auratus | MesAur1.0 | public | gene0 | Gfra1 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/349/665/GCF_000349665.1_MesAur1.0/ |
| 绵羊 | Ovis_aries | Oar_v4.0 | public | gene1 | RTP5 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/298/735/GCF_000298735.2_Oar_v4.0/GCF_000298735.2_Oar_v4.0_genomic.fna.gz |
| 草莓 | Fragaria_vesca | v2.0.a1 | public | augustus_masked-LG0-processed-gene-112.8 | null | ftp://ftp.bioinfo.wsu.edu/species/Fragaria_vesca/Fvesca-genome.v2.0.a1/assembly/Fragaria_vesca_v2.0.a1_pseudomolecules.fasta.gz |
| 丹参 | Salvia_miltiorrhiza | v1 | public | SMil_00012983|size70421-augustus-gene-0.31 | null | |
| 蓖麻 | Ricinus_communis | Release_0.1 | public | 27371.t000001 | null | http://castorbean.jcvi.org/castorbean_downloads.shtml |
| 葡萄孢菌B05.10 | Botrytis_cinerea_B05.10 | ASM83294v1 | public | Bcin01g00010 | Bcboa1 | http://fungi.ensembl.org/index.html |
| 黄单胞菌 | Xanthomonas_albilineans_GPE_PC73 | ASM8796v1 | public | gene0 | VB87_RS00475 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/087/965/GCF_000087965.2_ASM8796v1/GCF_000087965.2_ASM8796v1_genomic.fna.gz |
| 桃 | Prunus_persica | v2.0_GDR | public | Prupe.1G000100_v2.0.a1 | Prupe.1G000100 | |
| 丹参 | Salvia_miltiorrhiza | snnu_v1 | public | SMil_00000001-processed-gene-0.0 | null | |
| 大麦 | Hordeum_vulgare | PGSB_r1 | public | HORVU1Hr1G000010 | null | http://webblast.ipk-gatersleben.de/barley_ibsc/downloads/ |
| 小菜蛾 | Plutella_xylostella | DBM_FJ_V1.1 | public | gene0 | LOC105390658 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/330/985/GCF_000330985.1_DBM_FJ_V1.1/GCF_000330985.1_DBM_FJ_V1.1_genomic.fna.gz |
| 斑马鱼 | Danio_rerio | GRCz11 | public | gene0 | rpl24 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11/GCF_000002035.6_GRCz11_genomic.fna.gz |
| 人参 | Panax_ginseng | v1 | public | maker-C77228089-snap-gene-0.1 | null | http://ginseng.vicp.io:23488/index.php/index/download.html |
| 石竹,康乃馨 | Dianthus_caryophyllus | r1.0 | public | Dca10 | null | ftp://ftp.kazusa.or.jp/pub/carnation/DCA_r1.0_scaffolds.fa.gz |
| 三裂叶薯 | Ipomoea_triloba | NSP323.v3 | public | itb00g00050 | null | http://sweetpotato.plantbiology.msu.edu/gt4sp_download.shtml |
| 草莓 | Fragaria_vesca | v2.0.a2 | public | gene00257-v1.0-hybrid | null | ftp://ftp.bioinfo.wsu.edu/species/Fragaria_vesca/Fvesca-genome.v2.0.a1/assembly/Fragaria_vesca_v2.0.a1_pseudomolecules.fasta.gz |
| 白梨 | Pyrus_x_bretschneideri | V1.1 | public | Pbr000001 | null | http://peargenome.njau.edu.cn/allfile/4.Pyrus_bretschneideri_scaffold.gz |
| 稻瘟病菌,稻瘟菌 | Magnaporthe_oryzae_70-15 | MG8 | public | gene1 | MGG_01947 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/495/GCF_000002495.2_MG8/GCF_000002495.2_MG8_genomic.fna.gz |
| 柚子 | Citrus_maxima | v1.0 | public | Cg1g000010 | null | http://citrus.hzau.edu.cn/orange/download/HWB.chromosome.fa.tar.gz |
| 大菱鲆 | Scophthalmus_maximus | sm5 | public | SMAX5B005727 | null | http://denovo.cnag.cat/genomes/turbot/download/sm5/sm5.scaffolds.fa.gz |
| 鲁氏酵母 | Zygosaccharomyces_rouxii | ASM2636v1 | public | gene0 | ZYRO0A00132g | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/026/365/GCF_000026365.1_ASM2636v1/GCF_000026365.1_ASM2636v1_genomic.fna.gz |
| 蜜蜂,欧洲蜜蜂 | Apis_mellifera | Amel_4.5_ncbi | public | gene0 | LOC726912 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/195/GCF_000002195.4_Amel_4.5/GCF_000002195.4_Amel_4.5_genomic.fna.gz |
| 禾谷镰刀菌 | Fusarium_graminearum_PH-1 | ASM24013v3 | public | gene0 | FGSG_11579 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/240/135/GCF_000240135.3_ASM24013v3/GCF_000240135.3_ASM24013v3_genomic.fna.gz |
| 葡萄 | Vitis_vinifera | IGGP_12x.23 | public | VIT_01s0010g00010 | null | ftp://ftp.ensemblgenomes.org/pub/release-23/plants/fasta/vitis_vinifera/dna/,ftp://ftp.ensemblgenomes.org/pub/release-23/plants/gff3/vitis_vinifera/Vitis_vinifera.IGGP_12x.23.gff3.gz |
| 苍耳轴霜霉菌,霍尔斯单轴霉 | Plasmopara_halstedii | GCA_900000015.1 | public | gene0 | PHALS_06503 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/000/015/GCA_900000015.1_Plasmopara_halstedii_genome/GCA_900000015.1_Plasmopara_halstedii_genome_genomic.fna.gz |
| 梅花 | Prunus_mume | P.mume_V1.0 | public | gene0 | LOC103343447 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/346/735/GCF_000346735.1_P.mume_V1.0/GCF_000346735.1_P.mume_V1.0_genomic.fna.gz |
| 铁皮石斛 | Dendrobium_catenatum | ASM160598v1 | public | gene0 | LOC110091778 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/605/985/GCF_001605985.1_ASM160598v1/GCF_001605985.1_ASM160598v1_genomic.fna.gz |
| 木虱 | Diaphorina_citri | version_1.1 | public | gene0 | LOC103504879 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/475/195/GCF_000475195.1_Diaci_psyllid_genome_assembly_version_1.1/GCF_000475195.1_Diaci_psyllid_genome_assembly_version_1.1_genomic.fna.gz |
| 二穗短柄草 | Brachypodium_distachyon | v3.1 | public | Bradi1g00200.v3.1 | Bradi1g00200 | https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Bdistachyon |
| 向日葵 | Helianthus_annuus | HanXRQr1.0 | public | gene0 | LOC110941587 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/127/325/GCF_002127325.1_HanXRQr1.0/GCF_002127325.1_HanXRQr1.0_genomic.fna.gz |
| 绿木霉 | Trichoderma_virens_Gv29-8 | ASM17099v1 | public | TRIVIDRAFT_10153 | null | ftp://ftp.ensemblgenomes.org/pub/fungi/release-38/fasta/trichoderma_virens/dna/Trichoderma_virens.ASM17099v1.dna.toplevel.fa.gz |
| 里氏木霉 | Trichoderma_reesei_QM6a | GCA_000167675.2 | public | TRIREDRAFT_102377 | null | ftp://ftp.ensemblgenomes.org/pub/fungi/release-38/fasta/trichoderma_reesei/dna/Trichoderma_reesei.GCA_000167675.2.dna.toplevel.fa.gz |
| 鲁氏酵母 | Zygosaccharomyces_rouxii | ZYGR_assembly01 | public | gene0 | ZYGR_0A00100 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/972/345/GCA_001972345.1_ZYGR_assembly01 |
| 白念珠菌 | Clavispora_lusitaniae_ATCC_42720 | ASM167369v2_CGD | public | OVF02679.1 | null | http://www.candidagenome.org/download/sequence/C_lusitaniae_CBS6936/current/C_lusitaniae_CBS6936_chromosomes.fasta.gz |
| 小鼠 | Mus_musculus | NCBIM37_mm9 | public | ENSMUSG00000000001 | Gnai3 | ftp://ftp.ensembl.org/pub/release-67/fasta/mus_musculus/dna/Mus_musculus.NCBIM37.67.dna.toplevel.fa.gz,ftp://ftp.ensembl.org/pub/release-67/gtf/mus_musculus/Mus_musculus.NCBIM37.67.gtf.gz |
| 草莓 | Fragaria_vesca | v4.0.a1 | public | FvH4_1g00010 | null | ftp://ftp.bioinfo.wsu.edu/species/Fragaria_vesca/Fvesca-genome.v4.0.a1/assembly/Fragaria_vesca_v4.0.a1.fasta.gz |
| 米曲霉 | Aspergillus_oryzae_RIB40 | ASM18445v3 | public | gene0 | AO090009000001 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/184/455/GCF_000184455.2_ASM18445v3/GCF_000184455.2_ASM18445v3_genomic.fna.gz |
| 球毛壳霉CBS 148.51 | Chaetomium_globosum_CBS_148.51 | ASM14336v1 | public | gene0 | CHGG_11121 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/143/365/GCF_000143365.1_ASM14336v1/GCF_000143365.1_ASM14336v1_genomic.fna.gz |
| 短管赤眼蜂 | Trichogramma_pretiosum | Tpre_2.0 | public | gene0 | LOC106653979 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/599/845/GCF_000599845.2_Tpre_2.0/GCF_000599845.2_Tpre_2.0_genomic.fna.gz |
| 灰飞虱 | Laodelphax_striatella | v1 | public | evm.TU.Contig4138.1 | EVM%20prediction%20Contig4138.1 | ftp://penguin.genomics.cn/pub/10.5524/100001_101000/100361/Laodelphax_striatellus.genome.fa.gz |
| 猕猴桃 | Actinidia_chinensis | Red5_PS1_1.69.0 | public | Acc00111 | null | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/024/255/GCA_003024255.1_Red5_PS1_1.69.0/GCA_003024255.1_Red5_PS1_1.69.0_genomic.fna.gz |
| 白念珠菌 | Candida_albicans_SC5314 | Assembly22 | public | C1_00010W_A | null | http://www.candidagenome.org/download/sequence/C_albicans_SC5314/Assembly22/current/C_albicans_SC5314_version_A22-s07-m01-r55_chromosomes.fasta.gz |
| 茶树 | Camellia_sinensis | customer_v1 | public | TEA000001.1_gene | TEA000001.1 | http://pcsb.ahau.edu.cn:8080/CSS/ |
| 白菜,油菜 | Brassica_rapa | v2.5 | public | evm.TU.BraA01000001 | EVM%20prediction%20BraA01000001 | http://brassicadb.org/brad/datasets/pub/Genomes/Brassica_rapa/V2.0/V2.5/Chr/BrapaV2.5_Chr.fa.gz |
| 生防木霉 | Trichoderma_guizhouense | ASM202278v1 | public | A0O28_0000010 | null | ftp://ftp.ensemblgenomes.org/pub/fungi/release-39/fasta/fungi_ascomycota3_collection/trichoderma_guizhouense/dna/Trichoderma_guizhouense.ASM202278v1.dna.toplevel.fa.gz |
| 藜麦 | Chenopodium_quinoa | PI_614886 | public | AUR62000001 | null | http://www.cbrc.kaust.edu.sa/chenopodiumdb/download/Cq_PI614886_genome_V1_pseudomolecule.fa.gz |
| 花生 | Arachis_hypogaea | Tifrunner.gnm1.ann1.CCJH | public | arahy.Tifrunner.gnm1.ann1.0002EG | arahy.0002EG | https://www.peanutbase.org/data/public/Arachis_hypogaea/Tifrunner.gnm1.KYV3/arahy.Tifrunner.gnm1.KYV3.genome_main.fna.gz,https://www.peanutbase.org/data/public/Arachis_hypogaea/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.gff3.gz |
| 梨孢镰刀菌 | Fusarium_poae | FPOA1.0 | public | gene0 | FPOA_00001 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/675/295/GCA_001675295.1_FPOA1.0/GCA_001675295.1_FPOA1.0_genomic.fna.gz |
| 小鼠 | Mus_musculus | GRCm38_release79 | public | ENSMUSG00000000001 | Gnai3 | ftp://ftp.ensembl.org/pub/release-79/fasta/mus_musculus/dna/Mus_musculus.GRCm38.dna.toplevel.fa.gz,ftp://ftp.ensembl.org/pub/release-79/fasta/mus_musculus/dna/Mus_musculus.GRCm38.dna.toplevel.fa.gz,ftp://ftp.ensembl.org/pub/release-79/gtf/mus_musculus/Mus_musculus.GRCm38.79.gtf.gz |
| 斜纹夜蛾 | Spodoptera_litura | ASM270686v1 | public | gene0 | LOC111348347 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/706/865/GCF_002706865.1_ASM270686v1 |
| 狗尾草 | Setaria_viridis | v2.1 | public | Sevir.1G000100.v2.1 | Sevir.1G000100 | https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Sviridis |
| 烟粉虱 | Bemisia_tabaci | customer_v1 | public | BTA000001.1.gene | Btabaci_GLEAN_10027186 | |
| 珠母 | Pinctada_fucata | v2.0 | public | pfu_aug2.0_1.1_03316 | null | |
| 牛 | Bos_taurus | UMD_3.1.1 | public | gene10 | LOC101903444 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/055/GCF_000003055.5_Bos_taurus_UMD_3.1.1/ |
| 番茄 | Solanum_lycopersicum | ITAG2.4 | public | Solyc00g005000.2.ITAG2.4 | Solyc00g005000.2 | https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Slycopersicum |
| 半滑舌鳎 | Cynoglossus_semilaevis | Cse_v1.0 | public | gene1 | LOC103384837 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/523/025/GCF_000523025.1_Cse_v1.0/GCF_000523025.1_Cse_v1.0_genomic.fna.gz |
| 红鳍东方鲀 | Takifugu_rubripes | FUGU5 | public | gene100 | slc16a5 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/180/615/GCF_000180615.1_FUGU5/GCF_000180615.1_FUGU5_genomic.fna.gz |
| 飞蝗 | Locusta_migratoria | V2.4.1 | public | LOCMI16852 | null | http://159.226.67.243/download.htm |
| 苦瓜 | Momordica_charantia | ASM199503v1 | public | gene10 | LOC111011108 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/995/035/GCF_001995035.1_ASM199503v1/GCF_001995035.1_ASM199503v1_genomic.fna.gz |
| 野生二粒小麦 | Triticum_dicoccoides | WEWSeq_v.1.0 | public | TRIDC0UG000010 | null | https://www.dropbox.com/sh/3dm05grokhl0nbv/AADZrrGlC6CyhTeKuzNTC0Ota/Pseudomolecules?dl=0&preview=151210_zavitan_v2_pseudomolecules.fasta |
| 香菇 | Lentinula_edodes | Strain_W1_26 | public | LE01Gene00001 | null | http://legdb.chenlianfu.com/page/download.html |
| 鹿角珊瑚,指形轴孔珊瑚 | Acropora_digitifera | Adig_1.1 | public | gene0 | LOC107326863 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/222/465/GCF_000222465.1_Adig_1.1/GCF_000222465.1_Adig_1.1_genomic.fna.gz |
| 珊瑚藻 | Guillardia_theta_CCMP2712 | Guith1 | public | gene0 | GUITHDRAFT_98901 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/315/625/GCF_000315625.1_Guith1/GCF_000315625.1_Guith1_genomic.fna.gz |
| 贻贝 | Bathymodiolus_platifrons | Bpl_v1.0 | public | 10001:Bpl_scaf_46049-0.0 | Bpl_scaf_46049-0.0 | https://datadryad.org/resource/doi:10.5061/dryad.h9942 |
| 哈茨木霉 | Trichoderma_harzianum | ASM283884v1 | public | gene0 | CI102_1 | https://www.ncbi.nlm.nih.gov/assembly/GCA_002838845.1 |
| 油菜 | Brassica_napus | ZS11_NCBI | public | gene0 | LOC106345161 | https://www.ncbi.nlm.nih.gov/assembly/GCF_000686985.2 |
| 鲤鱼 | Cyprinus_carpio | GCF_000951615_1 | public | gene0 | LOC109063716 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/951/615/GCF_000951615.1_common_carp_genome |
| 伯氏疟原虫,鼠疟原虫 | Plasmodium_berghei_ANKA | PBANKA01 | public | gene0g | PBANKA_010005 | https:ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/002/375/GCA_900002375.1_PBANKA01 |
| 红车轴草,红菽草 | Trifolium_pratense | Tp1.0 | public | gene0 | L195_g000001 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/583/005/GCA_000583005.2_Tp1.0/GCA_000583005.2_Tp1.0_genomic.fna.gz |
| 人参 | Panax_ginseng | v1_new | public | maker-C77228089-snap-gene-0.1 | null | http://ginseng.vicp.io:23488/index.php/index/download.html |
| 桃蚜 | Myzus_persicae | MPER_G0061.0 | public | gene0 | LOC111031591 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/856/785/GCF_001856785.1_MPER_G0061.0/GCF_001856785.1_MPER_G0061.0_genomic.fna.gz |
| 绿豆 | Vigna_radiata_var._radiata | Vradiata_ver6 | public | gene0 | LOC106780119 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/741/045/GCF_000741045.1_Vradiata_ver6/GCF_000741045.1_Vradiata_ver6_genomic.fna.gz |
| 油桐 | Vernicia_fordii | customer_v1 | public | VF00001 | null | |
| 栉孔扇贝 | Azumapecten_farreri | CfBase | public | evm.TU.C26999508.1 | EVM%20prediction%20C26999508.1 | http://mgb.ouc.edu.cn/cfbase/html/download/CFgenome/Chlamys_farreri.scaffold.fasta.zip |
| 马铃薯,土豆 | Solanum_tuberosum | v4.04 | public | PGSC0003DMG400000001 | null | http://solanaceae.plantbiology.msu.edu/pgsc_download.shtml |
| 南方菟丝子 | Cuscuta_australis | Cau_v1.0 | public | gene0 | DM860_000001 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/260/385/GCA_003260385.1_Cau_v1.0/GCA_003260385.1_Cau_v1.0_genomic.fna.gz |
| 番木瓜 | Carica_papaya | ASGPBv0.4 | public | evm.TU.contig_23646 | null | https://phytozome.jgi.doe.gov/pz/portal.html#!bulk?org=Org_Cpapaya |
| 日本晴,粳稻,水稻 | Oryza_sativa | Build_4.0 | public | gene0 | Os01g0100100 | https://www.ncbi.nlm.nih.gov/genome/10 |
| 丹参 | Salvia_miltiorrhiza | EVM | public | EVM0000001 | null | |
| 平原菟丝子 | Cuscuta_campestris | v0.32 | public | Cc000003 | null | http://plabipd.de/portal/cuscuta-campestris |
| 美洲大蠊,美洲蟑螂 | Periplaneta_americana | v1 | public | gene_PaOGS00005 | null | |
| 嗜热四膜虫 | Tetrahymena_thermophila | JCVI_TTA1_2.2 | public | gene0 | TTHERM_002653498 | https://www.ncbi.nlm.nih.gov/genome/?term=Tetrahymena+thermophila |
| 希瓦氏菌 | Shewanella_oneidensis | ASM14616v2 | public | gene0 | mioC | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/146/165/GCF_000146165.2_ASM14616v2/GCF_000146165.2_ASM14616v2_genomic.fna.gz |
| 家蚕微粒子病原虫CQ1,孢子虫 | Nosema_bombycis_CQ1 | NosBomCQ1_v1.0 | public | gene0 | NBO_1g0001 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/383/075/GCA_000383075.1_NosBomCQ1_v1.0/GCA_000383075.1_NosBomCQ1_v1.0_genomic.fna.gz |
| 烟草黑胫病菌,烟草疫霉 | Phytophthora_parasitica_INRA-310 | PP_INRA_310_V2 | public | gene0 | PPTG_00001 | https://www.ncbi.nlm.nih.gov/assembly/GCF_000247585.1/ |
| 日本血吸虫 | Schistosoma_japonicum | ASM15177v1 | public | Sjp_0000020 | null | http://parasite.wormbase.org/Schistosoma_japonicum_prjea34885/Info/Index?db=core |
| 橡胶草 | Taraxacum_kok-saghyz | GWHAAAA00000000 | public | evm.TU.utg0.37 | EVM%20prediction%20utg0.37 | ftp://download.big.ac.cn/gwh/Genome/Plants/Taraxacum_kok-saghyz_TKS_GWHAAAA00000000/ |
| 莲花 | Lotus_japonicus | lotus_r3.0 | public | Lj0g3v0000019 | NODE_79257_length_864_cov_9.763889.path4 | ftp://ftp.kazusa.or.jp/pub/lotus/lotus_r3.0/ |
| 铁皮石斛 | Dendrobium_catenatum | ASM160598v2 | public | gene0 | MA16_Dca014550 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/605/985/GCA_001605985.2_ASM160598v2 |
| 草鱼 | Ctenopharyngodon_idellus | v1 | public | CI01000000_00034855_00045035 | PREDICTED:_wolframin_[Danio_rerio] | www.ncgr.ac.cn/grasscarp/files/C_idella_female_scaffolds.fasta.v1.gz,www.ncgr.ac.cn/grasscarp/files/C_idella_female_genemodels.v1.gff.gz |
| 节节麦 | Aegilops_tauschii | Aet_MR_1.0 | public | gene0 | LOC109731406 | https://www.ncbi.nlm.nih.gov/assembly/GCF_001957025.1 |
| 烟曲霉 | Aspergillus_fumigatus_Af293 | ASM265v1 | public | gene0 | AFUA_1G00100 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/655/GCF_000002655.1_ASM265v1/ |
| 甜瓜 | Cucumis_melo | v4.0 | public | MELO3C000001.2 | null | https://www.melonomics.net/melonomics.html#/download |
| 仿刺参,刺参 | Apostichopus_japonicus | ASM275485v1 | public | gene0 | BSL78_00001 | https://www.ncbi.nlm.nih.gov/assembly/GCA_002754855.1/ |
| 蛹虫草CM01 | Cordyceps_militaris_CM01 | CmilitarisCM01_v01 | public | gene0 | CCM_00001 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/225/605/GCF_000225605.1_CmilitarisCM01_v01/ |
| 虫草杯孢霉 | Calcarisporium_cordycipiticola | customer_v1 | public | TU.CCOR_00001 | Prediction_CCOR_00001 | |
| 甘蔗 | Saccharum_officinarum | R570_monoploid | public | Sh01_g000010 | null | http://sugarcane-genome.cirad.fr/sites/default/files/download/single_tiling_path_assembly.fna.gz |
| 意蜂 | Apis_mellifera | Amel_4.5_OGSv3.2 | public | GB40001 | null | http://hymenopteragenome.org/beebase/?q=download_sequences |
| 鲁氏酵母 | Zygosaccharomyces_rouxii | customer1 | public | EVM0000001 | null | |
| 大麦 | Hordeum_vulgare | Hv_IBSC_PGSB_v2 | public | AGP50735 | psbA | ftp://ftp.ensemblgenomes.org/pub/plants/release-40/fasta/hordeum_vulgare/dna/Hordeum_vulgare.Hv_IBSC_PGSB_v2.dna.toplevel.fa.gz |
| 二斑叶螨 | Tetranychus_urticae | genome_200909 | public | tetur01g00010 | null | https://bioinformatics.psb.ugent.be/gdb/tetranychus |
| 绿僵菌属 | Metarhizium_acridum_CQMa_102 | MetAcr_May2010 | public | MAC_00001 | null | ftp://ftp.ensemblgenomes.org/pub/fungi/release-40/fasta/fungi_ascomycota1_collection/metarhizium_acridum_cqma_102/dna/ |
| 郁金香 | Tulipa_gesneriana | customer_v1 | public | maker-scaffold_0_ref0040988-gene-1.0 | null | |
| 蛋白核小球藻 | Chlorella_pyrenoidosa | FACHB_9 | public | g1 | null | |
| 木虱 | Diaphorina_citri | v2.0 | public | DcitrP000000.1 | null | https://citrusgreening.org/organism/Diaphorina_citri/genome |
| 结缕草 | Zoysia_japonica | r1.1 | public | Zjn_sc00001.1.g00010.1.sm.mkhc | null | ftp://ftp.kazusa.or.jp/pub/zoysia/ZJN_r1.1.genome.gz |
| 家蚕 | Bombyx_mori | v1.0 | public | BGIBMGA000001 | null | http://silkworm.genomics.org.cn/ |
| 小麦 | Triticum_aestivum | IWGSC_RefSeq_v1.1 | public | TraesCS1A02G000100 | null | https://urgi.versailles.inra.fr/download/iwgsc/IWGSC_RefSeq_Annotations/v1.1/ |
| 偏肿栓菌 | Trametes_gibbosa | Tragib1 | public | gene_1 | jgi.p|Tragib1|1485355 | http://genome.jgi.doe.gov/Tragib1/Tragib1.home.html |
| 莱茵绿僵菌 | Metarhizium_rileyi_RCEF_4871 | NOR_1.0 | public | gene0 | NOR_00001 | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/636/745/GCA_001636745.1_NOR_1.0/GCA_001636745.1_NOR_1.0_genomic.fna.gz |
| 层生镰刀菌 | Fusarium_proliferatum | gx2_YN41 | public | FPRO_00001 | null | |
| 甘蓝 | Brassica_oleracea | v1.0 | public | gene_Bol004365 | null | http://www.ocri-genomics.org/bolbase/login.htm |
| 木薯 | Manihot_esculenta | v6.1 | public | Manes.01G000100.v6.1 | Manes.01G000100 | https://phytozome.jgi.doe.gov/pz/portal.html |
| 米曲霉 | Aspergillus_oryzae_RIB40 | version_s01_m09_r09 | public | AO090001000001 | null | http://www.aspgd.org/ |